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Home » Recipes » Pasta

Gluten-free Three Cheese Mac and Cheese

Published: Jun 18, 2020 · Modified: Mar 7, 2022 by Sara Vaughn · Leave a Comment

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This gluten-free three cheese stovetop mac and cheese recipe has all the cheesy goodness you love and is ready in only a few minutes!

This homemade stovetop mac and cheese is one of those dishes that my entire family LOVES. I always have to make a double batch of it when I make some because our oldest and my husband will eat it all before anyone else can even get their hands on some, haha. They will literally stand in the kitchen waiting for me to make it and start eating it right out of the pot while I make the rest of the meal; they love it so much.

Trust me; this is the BEST gluten-free mac and cheese recipe!

A black serving bowl is filled with creamy gluten-free macaroni and cheese with a silver serving spoon sitting in the dish.
Jump to:
  • Ingredients.
  • Ingredient notes and substitutions.
  • Steps.
  • Tips and tricks.
  • Gluten-free pasta FAQ.
  • Baking gluten-free mac and cheese.
  • Storing leftovers.
  • Reheating.
  • Make ahead.
  • More gluten-free pasta recipes.
  • 📖 Recipe

Ingredients.

Here are the ingredients needed to make a delicious homemade gluten-free mac and cheese.

  • Gluten-free Pasta of Choice
  • Milk
  • Heavy Cream
  • Butter
  • White Cheddar Cheese
  • Medium/ Sharp Cheddar Cheese
  • Cream Cheese
  • Corn Starch or 1:1 gluten-free flour
  • Ground Mustard
  • Garlic Powder
  • Onion Powder
  • Paprika
  • Salt and Pepper
Overhead view of the ingredients needed to make a gluten-free mac and cheese.
Ingredients needed for making homemade gluten-free stovetop mac and cheese.

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Ingredient notes and substitutions.

  • Cheese - When it comes to cheeses for macaroni and cheese, I always find a mixture that works best to get the full flavor. However, if you don't like a specific kind or have one hand, just sub in the total amounts for the cheese you want to use; it will still be delicious. Make sure that you have at least one kind of soft melting cheese. For this recipe, that is the cream cheese. Avoid cheeses like parmesan that do not melt as well.
  • Corn Starch - I don't recommend subbing this out for something like tapioca in this case. The reason is the way the sauce ends up sticking to the pasta. I've tried tapioca and arrowroot starch for this, and it just doesn't yield the same smooth, thick texture that macaroni and cheese needs. If you can't use corn starch, you can substitute equal amounts of 1:1 gluten-free flour.

Steps.

This gluten-free mac and cheese comes together super simple, and it only takes a few minutes to make.

  1. Make the pasta and set it aside.
  2. Make the sauce
  3. Combine and enjoy!
Taking the steps to make a gluten free roux and turning into a cheese sauce for mac and cheese.
Steps for making the creamiest cheese sauce for stovetop mac and cheese.

Tips and tricks.

Making stovetop mac and cheese sauce is not hard, but here are a few tips and tricks to keep it from becoming grainy and the cheese from separating.

  • Do NOT skip hydrating your starch of choice for making the roux. This simple step helps to hydrate the gluten-free starch, which tends to take more liquid than traditional flour.
  • Use room temperature ingredients. Making sure that all the ingredients are at similar temperatures helps everything come together without being shocked. I like to keep everything at room temperature for about 30 minutes before I start cooking.
  • Do NOT use pre-shredded cheeses. Shredding your cheese is one step that can really make a difference to a creamy cheese sauce and keep the cheese from separating in the sauce. Pre-shredded cheese often has anti-caking and mold inhibitor ingredients that keep the cheese from clumping together. These ingredients can also keep the cheese to not melt as it normally would.
  • Slowly add the cheese. Do not add all the cheese at once. Add it slowly in small amounts and let it melt before adding more.

Gluten-free pasta FAQ.

There are so many different varieties of gluten-free pasta. The one thing they all have in common is that they are much starchier than traditional pasta. Here are a few of my favorite ways to keep them from becoming mush.

  • Do NOT overcook gluten-free pasta. - Each packaging has directions, but even these can be wrong. I always start by looking at the package and subtracting 2-3 minutes from the cooking time. Set your timer for that and begin checking the pasta. Add time in 30-seconds increments until you get the pasta to the consistency you want.
  • Watch your pasta water. - Cook the pasta in double the water you would for traditional pasta. Gluten-free pasta has a higher starch content, and because of this, it needs more water to have space to cook without becoming mush.
  • Salt the water. - Salting gluten-free pasta is just as important as salting traditional pasta. Salt the water once it comes to a boil before adding the pasta. The salt in the water helps to season the pasta as it cooks.
  • Stir occasionally. - Gluten-free pasta tends to stick to itself as it cooks. This can cause it to cook unevenly and become mushy. I've found that gently stirring the gluten-free pasta a few times throughout the cooking time helps keep it from sticking to itself and from sticking to the pot.
  • Rise with cold water. - Rinsing the gluten-free pasta quickly with a little bit of cold water will help it stop cooking, so you don't end up with mushy gluten-free mac and cheese. This also helps to remove any excess starches that gluten-free pasta has.

Baking gluten-free mac and cheese.

Can you bake this gluten-free mac and cheese?

The short answer is this recipe is not meant to be baked. For baked mac and cheese to have the right consistency, it needs a different ratio of liquids to keep it from drying out. This gluten-free mac and cheese recipe is a stovetop recipe. It comes together fast but don't worry; it still has all the classic mac and cheese flavor you love.

Gluten-free mac and cheese being scooped up showing off the creamy, cheesy texture of the cheese sauce on the pasta.

Storing leftovers.

Stovetop mac and cheese can be kept in an airtight container in the fridge for 2-3 days. Do not freeze leftover mac and cheese. Cooked pasta never freezes well, whether it is gluten-free or not.

Reheating.

I do not recommend microwaving leftover mac and cheese for the best results; warm leftover mac and cheese in a pot on the stove over medium heat. I add about ¼ cup of milk to the cold mac and cheese and gently stir it until it is warmed through, about 5-7 minutes.

Make ahead.

While this recipe is best served fresh from the stove, there are a few ways you can cut your time and make it ahead of time.

  • You can make the sauce ahead of time. Once you are ready to serve it you will just need to cook the pasta and warm the sauce before tossing it together.
  • You can also make it ahead and store it in the fridge. Then you can warm it up just like you would if it was leftover mac and cheese.

More gluten-free pasta recipes.

  • Easy Gluten-free Lasagna
  • Gluten-free Five Cheese Marinara
  • Homemade Gluten-free Ravioli
  • Gluten-free Egg Noodles
Gluten-free stovetop mac and cheese in a skillet sitting on a wooden board and being scooped with a wooden spoon.

📖 Recipe

Gluten-free stovetop mac and cheese up close showing off the creamy texture.

Gluten-free Three Cheese Mac and Cheese

Sara Vaughn
This gluten-free three cheese stovetop mac and cheese recipe has all the cheesy goodness you love and is ready in only a few minutes!
Print Recipe Pin Recipe
Prep Time 10 mins
Cook Time 20 mins
Total Time 30 mins
Course pasta, Side Dish
Cuisine American
Servings 8
Calories 413 kcal

Ingredients
  

  • 1 Box Gluten-free Pasta of Choice Most gluten-free pastas come in 12 ounce boxes.
  • 1 ½ Cups Milk
  • 1 Cup Heavy Whipping Cream
  • ¼ Cup Butter
  • ¼ Cup Corn Starch or 1:1 gluten-free flour
  • 1 ½ Cups White Chedar Cheese
  • 1 ½ Cups Cheddar Cheese
  • ½ Cup Cream Cheese softened
  • 1 Teaspoon Dried Mustard
  • ½ Teaspoon Paprika
  • 1 ½ Teaspoons Garlic Powder
  • 1 Teaspoon Onion Powder
  • 1 ½ Teaspoons Salt
  • ½ Teaspoon Pepper

Instructions
 

Cook the pasta.

  • Boil the pasta and set aside.

Make the cheese sauce.

  • While the pasta is cooking shred the cheeses as needed and set them aside and let the cream cheese come to room temperature.
  • In a small bowl, whisk together the cornstarch and ½ cup of the milk and set it aside.
  • In a pot over medium heat melt the butter.
  • Add the corn starch slurry, remaining milk, heavy cream, and cream cheese. Let the mixture cook, occasionally stirring until the cream cheese has melted and the sauce starts to thicken a little bit.
  • Stir the spices into the sauce.
  • Once the sauce has started to thicken, reduce the heat to low and add a little bit of the cheese to the pot and stir until melted. Add the remaining cheese in increments and continue to stir until all the cheese is completely melted in the sauce.

Make the mac and cheese

  • Combine the pasta and the sauce and enjoy!

Notes

Making stovetop mac and cheese sauce is not hard, but here are a few tips and tricks to keep it from becoming grainy and the cheese from separating.
  • Do NOT skip hydrating your starch of choice for making the roux. This simple step helps to hydrate the gluten-free starch, which tends to take more liquid than traditional flour.
  • Use room temperature ingredients. Making sure that all the ingredients are at similar temperatures helps everything come together without being shocked. I like to keep everything at room temperature for about 30 minutes before I start cooking.
  • Do NOT use pre-shredded cheeses. Shredding your cheese is one step that can really make a difference to a creamy cheese sauce and keep the cheese from separating in the sauce. Pre-shredded cheese often has anti-caking and mold inhibitor ingredients that keep the cheese from clumping together. These ingredients can also keep the cheese to not melt as it normally would.
  • Slowly add the cheese. Do not add all the cheese at once. Add it slowly in small amounts and let it melt before adding more.
Keyword gluten free mac and cheese, homemade mac and cheese, mac and cheese recipe, macaroni and cheese, stovetop mac and cheese

If you make this recipe, please let me know! Leave a comment, rate it, and don't forget to tag a photo #grainfreetable or @grainfreetable on Instagram. I'd love to see what you come up with!

Check these out next!

  • Gluten-Free Chicken Tetrazzini Casserole
  • Creamy Gluten-free Goat Cheese Pasta Sauce
  • Quick and Easy Pasta Salad with Chicken - Gluten-free
  • Creamy Gluten and Dairy-free Alfredo Sauce

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Welcome to Grain Free Table! I’m Sara- a busy wife, mom of two girls, and lover of food. Here you’ll find lots of easy and delicious gluten & allergy-friendly recipes, info about my favorite food & products, as well as little snippets of my health journey as I navigate my gluten-free way of life!

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